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  • How to Accurately Calculate a Protein’s Isoelectric Point (pI)

    By Contributor
    Updated Mar 24, 2022

    The isoelectric point (pI) is the pH at which a protein carries no net charge. It is a fundamental property in biochemistry, influencing solubility, stability, and interaction with other molecules. Because the pI depends on a protein’s amino‑acid composition, you need the exact sequence to calculate it.

    Step 1: Obtain the Protein Sequence

    If you already have the sequence, skip to Step 8. Otherwise, retrieve it from the UniProt database.

    Step 2: Search UniProt

    Enter the protein name or keyword in the search box and click Search.

    Step 3: Locate the Entry

    Browse the results, select the correct entry, and record its accession number.

    Step 4: Access ExPASy’s pI Calculator

    Navigate to the ExPASy Compute pI/Mw tool.

    Step 5: Input the Accession Number

    Paste the accession number into the designated field and click Click here to compute pI/Mw.

    Step 6: Submit

    Click the Submit button on the next screen.

    Step 7: Retrieve the Result

    Read the displayed isoelectric point (pI) value.

    Step 8: Manual Sequence Entry (if needed)

    Return to the ExPASy tool and paste or type the sequence directly into the input field.

    Step 9: Compute

    Click Click here to compute pI/Mw again.

    Step 10: View the pI

    Observe the calculated isoelectric point, which you can now use in your experimental design.

    For more advanced analyses, consider using the ExPASy Protein Tools suite, which offers additional features such as molecular weight calculation and pH-dependent properties.

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